HL_6Z1P_098
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUAAUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 6Z1P|1|Ab|A|1507, 6Z1P|1|Ab|A|1508, 6Z1P|1|Ab|U|1509, 6Z1P|1|Ab|A|1513
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Z1P_098 not in the Motif Atlas
- Homologous match to HL_4WF9_043
- Geometric discrepancy: 0.1163
- The information below is about HL_4WF9_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6Z1P|1|Ab|U|1504
6Z1P|1|Ab|U|1505
6Z1P|1|Ab|U|1506
6Z1P|1|Ab|A|1507
6Z1P|1|Ab|A|1508
6Z1P|1|Ab|U|1509
6Z1P|1|Ab|A|1510
6Z1P|1|Ab|A|1511
6Z1P|1|Ab|A|1512
6Z1P|1|Ab|A|1513
6Z1P|1|Ab|A|1514
Current chains
- Chain Ab
- LSU rRNA_2
Nearby chains
- Chain Ac
- Ribosomal protein L2
- Chain Aw
- Ribosomal protein L22/L17e
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