HL_6Z1P_111

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUAAUAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_111 not in the Motif Atlas

Geometric match to HL_5D8H_002

Geometric discrepancy: 0.3072

The information below is about HL_5D8H_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6Z1P|1|Bb|A|991
6Z1P|1|Bb|U|992
6Z1P|1|Bb|U|993
6Z1P|1|Bb|A|994
6Z1P|1|Bb|A|995
6Z1P|1|Bb|U|996
6Z1P|1|Bb|A|997
6Z1P|1|Bb|U|998

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BU

mS89

Chain Bn

Ribosomal protein S14

Chain Bs

Ribosomal protein S19