HL_6Z6J_020

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6Z6J|1|C1|U|879, 6Z6J|1|C1|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_020 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0964

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6Z6J|1|C1|A|876
6Z6J|1|C1|C|877
6Z6J|1|C1|G|878
6Z6J|1|C1|U|879
6Z6J|1|C1|G|880
6Z6J|1|C1|C|881
6Z6J|1|C1|A|882
6Z6J|1|C1|A|883
6Z6J|1|C1|A|884
6Z6J|1|C1|U|885

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17-A

Chain Lj

60S ribosomal protein L37-A