HL_6Z6J_028

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

6Z6J|1|C1|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_028 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.3817

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6Z6J|1|C1|U|1267
6Z6J|1|C1|G|1268
6Z6J|1|C1|U|1269
6Z6J|1|C1|A|1270
6Z6J|1|C1|A|1271
6Z6J|1|C1|C|1272
6Z6J|1|C1|A|1273
6Z6J|1|C1|A|1274

Current chains

Chain C1

25S rRNA

Nearby chains

Chain Lm

Ubiquitin-60S ribosomal protein L40