HL_6Z6J_049

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6Z6J|1|C1|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_049 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1458

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6Z6J|1|C1|G|2253
6Z6J|1|C1|U|2254
6Z6J|1|C1|A|2255
6Z6J|1|C1|A|2256
6Z6J|1|C1|C|2257
6Z6J|1|C1|U|2258
6Z6J|1|C1|A|2259
6Z6J|1|C1|U|2260
6Z6J|1|C1|G|2261
6Z6J|1|C1|A|2262
6Z6J|1|C1|C|2263

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain C5

Protein LSO2

Chain Se

40S ribosomal protein S30-A