HL_6Z6J_091

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

6Z6J|1|C2|U|833

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_091 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.3094

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6Z6J|1|C2|A|829
6Z6J|1|C2|U|830
6Z6J|1|C2|U|831
6Z6J|1|C2|U|832
6Z6J|1|C2|U|833
6Z6J|1|C2|G|834
6Z6J|1|C2|U|835
6Z6J|1|C2|U|836
6Z6J|1|C2|G|837
6Z6J|1|C2|G|838
6Z6J|1|C2|U|839
6Z6J|1|C2|U|840
6Z6J|1|C2|U|841
6Z6J|1|C2|C|842
6Z6J|1|C2|U|843

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SL

40S ribosomal protein S11-A