HL_6Z6J_095

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_095 not in the Motif Atlas

Homologous match to HL_4V88_209

Geometric discrepancy: 0.2376

The information below is about HL_4V88_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07372.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6Z6J|1|C2|U|1055
6Z6J|1|C2|U|1056
6Z6J|1|C2|U|1057
6Z6J|1|C2|U|1058
6Z6J|1|C2|U|1059
6Z6J|1|C2|U|1060
6Z6J|1|C2|A|1061
6Z6J|1|C2|A|1062
6Z6J|1|C2|U|1063
6Z6J|1|C2|G|1064

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain Sb

40S ribosomal protein S27-A