HL_6Z6J_098

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

6Z6J|1|C2|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_098 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.1818

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6Z6J|1|C2|G|1188
6Z6J|1|C2|A|1189
6Z6J|1|C2|C|1190
6Z6J|1|C2|U|1191
6Z6J|1|C2|C|1192
6Z6J|1|C2|A|1193
6Z6J|1|C2|A|1194
6Z6J|1|C2|C|1195
6Z6J|1|C2|A|1196
6Z6J|1|C2|C|1197

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16-A

Chain SU

40S ribosomal protein S20

Chain Sd

40S ribosomal protein S29-A