HL_6Z6J_102

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

6Z6J|1|C2|U|1362, 6Z6J|1|C2|U|1363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_102 not in the Motif Atlas

Homologous match to HL_4V88_216

Geometric discrepancy: 0.4918

The information below is about HL_4V88_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36540.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6Z6J|1|C2|C|1359
6Z6J|1|C2|A|1360
6Z6J|1|C2|U|1361
6Z6J|1|C2|U|1362
6Z6J|1|C2|U|1363
6Z6J|1|C2|G|1364

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SQ

40S ribosomal protein S16-A

Chain ST

40S ribosomal protein S19-A