HL_6Z6K_078

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

6Z6K|1|C2|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_078 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1425

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6Z6K|1|C2|G|243
6Z6K|1|C2|A|244
6Z6K|1|C2|U|245
6Z6K|1|C2|G|246
6Z6K|1|C2|A|247
6Z6K|1|C2|U|248
6Z6K|1|C2|U|249
6Z6K|1|C2|C|250

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SL

40S ribosomal protein S11-A