HL_6Z6K_099

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

6Z6K|1|C2|G|1243, 6Z6K|1|C2|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_099 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.3002

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6Z6K|1|C2|A|1238
6Z6K|1|C2|U|1239
6Z6K|1|C2|U|1240
6Z6K|1|C2|G|1241
6Z6K|1|C2|A|1242
6Z6K|1|C2|G|1243
6Z6K|1|C2|A|1244
6Z6K|1|C2|G|1245
6Z6K|1|C2|C|1246
6Z6K|1|C2|U|1247

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain Sd

40S ribosomal protein S29-A