HL_6Z6K_101

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6Z6K|1|C2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_101 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1524

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6Z6K|1|C2|C|1309
6Z6K|1|C2|U|1310
6Z6K|1|C2|U|1311
6Z6K|1|C2|A|1312
6Z6K|1|C2|A|1313
6Z6K|1|C2|U|1314
6Z6K|1|C2|U|1315
6Z6K|1|C2|G|1316

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17-A