HL_6Z6L_052

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

6Z6L|1|L5|A|3642, 6Z6L|1|L5|A|3643, 6Z6L|1|L5|U|3644, 6Z6L|1|L5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6L_052 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.1753

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6Z6L|1|L5|U|3639
6Z6L|1|L5|U|3640
6Z6L|1|L5|U|3641
6Z6L|1|L5|A|3642
6Z6L|1|L5|A|3643
6Z6L|1|L5|U|3644
6Z6L|1|L5|U|3645
6Z6L|1|L5|A|3646
6Z6L|1|L5|A|3647
6Z6L|1|L5|A|3648
6Z6L|1|L5|A|3649

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

60S ribosomal protein L37