HL_6Z6L_062

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

6Z6L|1|L5|A|4214, 6Z6L|1|L5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6L_062 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1146

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6Z6L|1|L5|U|4210
6Z6L|1|L5|C|4211
6Z6L|1|L5|A|4212
6Z6L|1|L5|A|4213
6Z6L|1|L5|A|4214
6Z6L|1|L5|C|4215
6Z6L|1|L5|G|4216
6Z6L|1|L5|G|4217
6Z6L|1|L5|U|4218
6Z6L|1|L5|A|4219
6Z6L|1|L5|A|4220
6Z6L|1|L5|C|4221
6Z6L|1|L5|G|4222

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29