HL_6Z6L_089

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

6Z6L|1|S2|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6L_089 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2105

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6Z6L|1|S2|G|288
6Z6L|1|S2|G|289
6Z6L|1|S2|U|290
6Z6L|1|S2|G|291
6Z6L|1|S2|A|292
6Z6L|1|S2|C|293
6Z6L|1|S2|U|294
6Z6L|1|S2|C|295

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SL

40S ribosomal protein S11