HL_6Z6L_112

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

6Z6L|1|S2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6L_112 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1277

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6Z6L|1|S2|G|1366
6Z6L|1|S2|U|1367
6Z6L|1|S2|U|1368
6Z6L|1|S2|A|1369
6Z6L|1|S2|A|1370
6Z6L|1|S2|U|1371
6Z6L|1|S2|U|1372
6Z6L|1|S2|C|1373

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17