HL_6Z6M_027
3D structure
- PDB id
- 6Z6M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 6Z6M|1|L5|U|1596, 6Z6M|1|L5|A|1600, 6Z6M|1|L5|A|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Z6M_027 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.0927
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
6Z6M|1|L5|A|1593
6Z6M|1|L5|C|1594
6Z6M|1|L5|G|1595
6Z6M|1|L5|U|1596
6Z6M|1|L5|G|1597
6Z6M|1|L5|C|1598
6Z6M|1|L5|A|1599
6Z6M|1|L5|A|1600
6Z6M|1|L5|A|1601
6Z6M|1|L5|U|1602
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LP
- 60S ribosomal protein L17
- Chain Lj
- 60S ribosomal protein L37
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