HL_6Z6M_035

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6M_035 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.1663

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6Z6M|1|L5|U|2006
6Z6M|1|L5|G|2007
6Z6M|1|L5|U|2008
6Z6M|1|L5|A|2009
6Z6M|1|L5|A|2010
6Z6M|1|L5|C|2011
6Z6M|1|L5|A|2012
6Z6M|1|L5|A|2013

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain Lm

Ubiquitin-60S ribosomal protein L40