HL_6Z6M_065

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

6Z6M|1|L5|A|4214, 6Z6M|1|L5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6M_065 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1219

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6Z6M|1|L5|U|4210
6Z6M|1|L5|C|4211
6Z6M|1|L5|A|4212
6Z6M|1|L5|A|4213
6Z6M|1|L5|A|4214
6Z6M|1|L5|C|4215
6Z6M|1|L5|G|4216
6Z6M|1|L5|G|4217
6Z6M|1|L5|U|4218
6Z6M|1|L5|A|4219
6Z6M|1|L5|A|4220
6Z6M|1|L5|C|4221
6Z6M|1|L5|G|4222

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29