HL_6Z6M_071

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6M_071 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.1598

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6Z6M|1|L5|C|4417
6Z6M|1|L5|G|4418
6Z6M|1|L5|U|4419
6Z6M|1|L5|U|4420
6Z6M|1|L5|C|4421
6Z6M|1|L5|A|4422
6Z6M|1|L5|U|4423
6Z6M|1|L5|A|4424
6Z6M|1|L5|G|4425

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain LI

60S ribosomal protein L10-like

Chain Lm

Ubiquitin-60S ribosomal protein L40