HL_6Z6N_055
3D structure
- PDB id
- 6Z6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 6Z6N|1|L5|A|3760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Z6N_055 not in the Motif Atlas
- Homologous match to HL_8C3A_049
- Geometric discrepancy: 0.1732
- The information below is about HL_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6Z6N|1|L5|G|3757
6Z6N|1|L5|U|3758
6Z6N|1|L5|A|3759
6Z6N|1|L5|A|3760
6Z6N|1|L5|C|3761
6Z6N|1|L5|U|3762
6Z6N|1|L5|A|3763
6Z6N|1|L5|U|3764
6Z6N|1|L5|G|3765
6Z6N|1|L5|A|3766
6Z6N|1|L5|C|3767
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CB
- Elongation factor 2
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: