HL_6ZCE_009

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

6ZCE|1|A|A|400, 6ZCE|1|A|C|402, 6ZCE|1|A|G|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZCE_009 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.1569

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZCE|1|A|C|393
6ZCE|1|A|C|394
6ZCE|1|A|U|395
6ZCE|1|A|G|396
6ZCE|1|A|A|397
6ZCE|1|A|G|398
6ZCE|1|A|A|399
6ZCE|1|A|A|400
6ZCE|1|A|A|401
6ZCE|1|A|C|402
6ZCE|1|A|G|403
6ZCE|1|A|G|404

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain H

40S ribosomal protein S6-A

Chain J

40S ribosomal protein S8-A