HL_6ZCE_012

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

6ZCE|1|A|U|493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZCE_012 not in the Motif Atlas

Homologous match to HL_4V88_198

Geometric discrepancy: 0.5405

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6ZCE|1|A|C|491
6ZCE|1|A|A|492
6ZCE|1|A|U|493
6ZCE|1|A|U|494
6ZCE|1|A|C|495
6ZCE|1|A|G|496

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain j

RNA recognition motif (unknown)