HL_6ZCE_019

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZCE_019 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.2219

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6ZCE|1|A|A|900
6ZCE|1|A|G|901
6ZCE|1|A|G|902
6ZCE|1|A|U|903
6ZCE|1|A|G|904
6ZCE|1|A|A|905
6ZCE|1|A|A|906
6ZCE|1|A|A|907
6ZCE|1|A|U|908
6ZCE|1|A|U|909

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain P

40S ribosomal protein S14-A