HL_6ZJ3_041

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CGCAGCCG

Length

8 nucleotides

Bulged bases

6ZJ3|1|LH|C|2303, 6ZJ3|1|LH|G|2305, 6ZJ3|1|LH|C|2307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_041 not in the Motif Atlas

Homologous match to HL_8C3A_041

Geometric discrepancy: 0.0744

The information below is about HL_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6ZJ3|1|LH|C|2301
6ZJ3|1|LH|G|2302
6ZJ3|1|LH|C|2303
6ZJ3|1|LH|A|2304
6ZJ3|1|LH|G|2305
6ZJ3|1|LH|C|2306
6ZJ3|1|LH|C|2307
6ZJ3|1|LH|G|2308

Current chains

Chain LH

LSU rRNA chain 7

Nearby chains

Chain L1

Ribosomal protein eL39

Chain LC

Large subunit ribosomal RNA; LSU rRNA

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain LF

Large subunit ribosomal RNA; LSU rRNA

Chain LR

Ribosomal protein uL4

Chain Li

Ribosomal protein uL22

Chain Ly

Ribosomal protein eL37