HL_6ZJ3_049

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

ACCAAUUAU

Length

9 nucleotides

Bulged bases

6ZJ3|1|LH|U|2786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_049 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1709

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6ZJ3|1|LH|A|2780
6ZJ3|1|LH|C|2781
6ZJ3|1|LH|C|2782
6ZJ3|1|LH|A|2783
6ZJ3|1|LH|A|2784
6ZJ3|1|LH|U|2785
6ZJ3|1|LH|U|2786
6ZJ3|1|LH|A|2787
6ZJ3|1|LH|U|2788

Current chains

Chain LH

LSU rRNA chain 7

Nearby chains

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LY

Ribosomal protein uL14

Chain S1

Small subunit ribosomal RNA; SSU rRNA