HL_6ZJ3_079

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GUUGACUC

Length

8 nucleotides

Bulged bases

6ZJ3|1|S1|U|325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_079 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2716

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6ZJ3|1|S1|G|319
6ZJ3|1|S1|U|320
6ZJ3|1|S1|U|321
6ZJ3|1|S1|G|322
6ZJ3|1|S1|A|323
6ZJ3|1|S1|C|324
6ZJ3|1|S1|U|325
6ZJ3|1|S1|C|326

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SU

Ribosomal protein uS17