HL_6ZJ3_081

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UGUAUCGGA

Length

9 nucleotides

Bulged bases

6ZJ3|1|S1|G|434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_081 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1299

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

6ZJ3|1|S1|U|427
6ZJ3|1|S1|G|428
6ZJ3|1|S1|U|429
6ZJ3|1|S1|A|430
6ZJ3|1|S1|U|431
6ZJ3|1|S1|C|432
6ZJ3|1|S1|G|433
6ZJ3|1|S1|G|434
6ZJ3|1|S1|A|435

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SK

Ribosomal protein eS8

Chain SU

Ribosomal protein uS17