HL_6ZJ3_103

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

6ZJ3|1|S1|G|1653, 6ZJ3|1|S1|G|1655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_103 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2777

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6ZJ3|1|S1|A|1648
6ZJ3|1|S1|U|1649
6ZJ3|1|S1|U|1650
6ZJ3|1|S1|G|1651
6ZJ3|1|S1|A|1652
6ZJ3|1|S1|G|1653
6ZJ3|1|S1|A|1654
6ZJ3|1|S1|G|1655
6ZJ3|1|S1|C|1656
6ZJ3|1|S1|U|1657

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SS

Ribosomal protein uS14

Chain SW

Ribosomal protein uS19

Chain Sf

Ribosomal protein eS31