HL_6ZJ3_105

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GUUGAUUC

Length

8 nucleotides

Bulged bases

6ZJ3|1|S1|U|1724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_105 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1472

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6ZJ3|1|S1|G|1719
6ZJ3|1|S1|U|1720
6ZJ3|1|S1|U|1721
6ZJ3|1|S1|G|1722
6ZJ3|1|S1|A|1723
6ZJ3|1|S1|U|1724
6ZJ3|1|S1|U|1725
6ZJ3|1|S1|C|1726

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SV

Ribosomal protein eS17