HL_6ZJ3_127
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- ACGUGCAAA(PSU)
- Length
- 10 nucleotides
- Bulged bases
- 6ZJ3|1|LE|U|1178, 6ZJ3|1|LE|A|1182, 6ZJ3|1|LE|A|1183
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_127 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.2397
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
6ZJ3|1|LE|A|1175
6ZJ3|1|LE|C|1176
6ZJ3|1|LE|G|1177
6ZJ3|1|LE|U|1178
6ZJ3|1|LE|G|1179
6ZJ3|1|LE|C|1180
6ZJ3|1|LE|A|1181
6ZJ3|1|LE|A|1182
6ZJ3|1|LE|A|1183
6ZJ3|1|LE|PSU|1184
Current chains
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LQ
- Ribosomal protein uL3
- Chain Li
- Ribosomal protein uL22
- Chain Ly
- Ribosomal protein eL37
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