HL_6ZJ3_131
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- (PSU)(PSU)(OMU)AAUUGAAA
- Length
- 11 nucleotides
- Bulged bases
- 6ZJ3|1|LH|A|2626, 6ZJ3|1|LH|A|2627, 6ZJ3|1|LH|U|2628, 6ZJ3|1|LH|A|2632
- QA status
- Modified nucleotides: PSU, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_131 not in the Motif Atlas
- Homologous match to HL_8P9A_157
- Geometric discrepancy: 0.343
- The information below is about HL_8P9A_157
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6ZJ3|1|LH|PSU|2623
6ZJ3|1|LH|PSU|2624
6ZJ3|1|LH|OMU|2625
6ZJ3|1|LH|A|2626
6ZJ3|1|LH|A|2627
6ZJ3|1|LH|U|2628
6ZJ3|1|LH|U|2629
6ZJ3|1|LH|G|2630
6ZJ3|1|LH|A|2631
6ZJ3|1|LH|A|2632
6ZJ3|1|LH|A|2633
Current chains
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain Ly
- Ribosomal protein eL37
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