HL_6ZJ3_134

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CGUUCAAA(OMG)

Length

9 nucleotides

Bulged bases

6ZJ3|1|LI|U|3428

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_134 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.1905

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6ZJ3|1|LI|C|3426
6ZJ3|1|LI|G|3427
6ZJ3|1|LI|U|3428
6ZJ3|1|LI|U|3429
6ZJ3|1|LI|C|3430
6ZJ3|1|LI|A|3431
6ZJ3|1|LI|A|3432
6ZJ3|1|LI|A|3433
6ZJ3|1|LI|OMG|3434

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain L2

Ribosomal protein eL40

Chain Lc

60S ribosomal protein L10

Chain S2

Transfer RNA; tRNA