HL_6ZLW_016

3D structure

PDB id

6ZLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

6ZLW|1|2|U|890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZLW_016 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.4594

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6ZLW|1|2|U|885
6ZLW|1|2|A|886
6ZLW|1|2|U|887
6ZLW|1|2|U|888
6ZLW|1|2|U|889
6ZLW|1|2|U|890
6ZLW|1|2|G|891
6ZLW|1|2|U|892
6ZLW|1|2|U|893
6ZLW|1|2|G|894
6ZLW|1|2|G|895
6ZLW|1|2|U|896
6ZLW|1|2|U|897
6ZLW|1|2|U|898
6ZLW|1|2|U|899
6ZLW|1|2|C|900
6ZLW|1|2|G|901

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S11