HL_6ZM5_041

3D structure

PDB id

6ZM5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CACCACG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZM5_041 not in the Motif Atlas

Geometric match to HL_4AOB_001

Geometric discrepancy: 0.268

The information below is about HL_4AOB_001

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6ZM5|1|AA|C|734
6ZM5|1|AA|A|735
6ZM5|1|AA|C|736
6ZM5|1|AA|C|737
6ZM5|1|AA|A|738
6ZM5|1|AA|C|739
6ZM5|1|AA|G|740

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

28S ribosomal protein S34, mitochondrial

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AU

28S ribosomal protein S26, mitochondrial