HL_6ZM5_060

3D structure

PDB id

6ZM5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UUAACACAAA

Length

10 nucleotides

Bulged bases

6ZM5|1|B|U|1614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZM5_060 not in the Motif Atlas

Geometric match to HL_5B63_003

Geometric discrepancy: 0.2323

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

6ZM5|1|B|U|1613
6ZM5|1|B|U|1614
6ZM5|1|B|A|1615
6ZM5|1|B|A|1616
6ZM5|1|B|C|1617
6ZM5|1|B|A|1618
6ZM5|1|B|C|1619
6ZM5|1|B|A|1620
6ZM5|1|B|A|1621
6ZM5|1|B|A|1622

Current chains

Chain B

mitochondrial tRNAVal

Nearby chains

Chain 6

39S ribosomal protein L38, mitochondrial

Chain P

39S ribosomal protein L18, mitochondrial

Chain j

39S ribosomal protein L52, mitochondrial