HL_6ZM5_064
3D structure
- PDB id
- 6ZM5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- AUUUCGACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZM5_064 not in the Motif Atlas
- Homologous match to HL_4YCO_002
- Geometric discrepancy: 0.1149
- The information below is about HL_4YCO_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
6ZM5|1|w|A|31
6ZM5|1|w|U|32
6ZM5|1|w|U|33
6ZM5|1|w|U|34
6ZM5|1|w|C|35
6ZM5|1|w|G|36
6ZM5|1|w|A|37
6ZM5|1|w|C|38
6ZM5|1|w|U|39
Current chains
- Chain w
- A-site tRNA with aminoacylation
Nearby chains
- Chain 8
- 39S ribosomal protein L40, mitochondrial
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AJ
- 28S ribosomal protein S12, mitochondrial
- Chain y
- mRNA
Coloring options: