HL_6ZM7_026

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6ZM7|1|L5|U|1596, 6ZM7|1|L5|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZM7_026 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0619

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6ZM7|1|L5|A|1593
6ZM7|1|L5|C|1594
6ZM7|1|L5|G|1595
6ZM7|1|L5|U|1596
6ZM7|1|L5|G|1597
6ZM7|1|L5|C|1598
6ZM7|1|L5|A|1599
6ZM7|1|L5|A|1600
6ZM7|1|L5|A|1601
6ZM7|1|L5|U|1602

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37