HL_6ZM7_053

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

6ZM7|1|L5|A|3642, 6ZM7|1|L5|A|3643, 6ZM7|1|L5|U|3644, 6ZM7|1|L5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZM7_053 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.1562

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6ZM7|1|L5|U|3639
6ZM7|1|L5|U|3640
6ZM7|1|L5|U|3641
6ZM7|1|L5|A|3642
6ZM7|1|L5|A|3643
6ZM7|1|L5|U|3644
6ZM7|1|L5|U|3645
6ZM7|1|L5|A|3646
6ZM7|1|L5|A|3647
6ZM7|1|L5|A|3648
6ZM7|1|L5|A|3649

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

60S ribosomal protein L37