3D structure

PDB id
6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GUAACUAUGAC
Length
11 nucleotides
Bulged bases
6ZM7|1|L5|A|3760
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ZM7_056 not in the Motif Atlas
Homologous match to HL_8C3A_049
Geometric discrepancy: 0.1156
The information below is about HL_8C3A_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84702.1
Basepair signature
cWW-F-F-tHW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6ZM7|1|L5|G|3757
6ZM7|1|L5|U|3758
6ZM7|1|L5|A|3759
6ZM7|1|L5|A|3760
6ZM7|1|L5|C|3761
6ZM7|1|L5|U|3762
6ZM7|1|L5|A|3763
6ZM7|1|L5|U|3764
6ZM7|1|L5|G|3765
6ZM7|1|L5|A|3766
6ZM7|1|L5|C|3767

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain CE
Coiled-coil domain-containing protein 124
Chain S2
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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