3D structure

PDB id
6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GACUCAACAC
Length
10 nucleotides
Bulged bases
6ZM7|1|S2|A|1253
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ZM7_110 not in the Motif Atlas
Homologous match to HL_4V88_212
Geometric discrepancy: 0.1082
The information below is about HL_4V88_212
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.1
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6ZM7|1|S2|G|1245
6ZM7|1|S2|A|1246
6ZM7|1|S2|C|1247
6ZM7|1|S2|U|1248
6ZM7|1|S2|C|1249
6ZM7|1|S2|A|1250
6ZM7|1|S2|A|1251
6ZM7|1|S2|C|1252
6ZM7|1|S2|A|1253
6ZM7|1|S2|C|1254

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain CE
Coiled-coil domain-containing protein 124
Chain SQ
40S ribosomal protein S16
Chain SU
40S ribosomal protein S20
Chain Sd
40S ribosomal protein S29

Coloring options:


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