HL_6ZME_057

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6ZME|1|L5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZME_057 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0711

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6ZME|1|L5|U|3796
6ZME|1|L5|C|3797
6ZME|1|L5|U|3798
6ZME|1|L5|A|3799
6ZME|1|L5|A|3800
6ZME|1|L5|U|3801
6ZME|1|L5|U|3802
6ZME|1|L5|A|3803
6ZME|1|L5|G|3804

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain CH

Eukaryotic peptide chain release factor subunit 1

Chain LV

60S ribosomal protein L23

Chain S2

Small subunit ribosomal RNA; SSU rRNA