HL_6ZMI_026

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6ZMI|1|L5|U|1596, 6ZMI|1|L5|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMI_026 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0698

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6ZMI|1|L5|A|1593
6ZMI|1|L5|C|1594
6ZMI|1|L5|G|1595
6ZMI|1|L5|U|1596
6ZMI|1|L5|G|1597
6ZMI|1|L5|C|1598
6ZMI|1|L5|A|1599
6ZMI|1|L5|A|1600
6ZMI|1|L5|A|1601
6ZMI|1|L5|U|1602

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37