HL_6ZMI_057

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6ZMI|1|L5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMI_057 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0668

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6ZMI|1|L5|U|3796
6ZMI|1|L5|C|3797
6ZMI|1|L5|U|3798
6ZMI|1|L5|A|3799
6ZMI|1|L5|A|3800
6ZMI|1|L5|U|3801
6ZMI|1|L5|U|3802
6ZMI|1|L5|A|3803
6ZMI|1|L5|G|3804

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LV

60S ribosomal protein L23

Chain S2

Small subunit ribosomal RNA; SSU rRNA