HL_6ZMI_063
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UCAAACGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 6ZMI|1|L5|A|4214, 6ZMI|1|L5|C|4221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZMI_063 not in the Motif Atlas
- Homologous match to HL_8C3A_056
- Geometric discrepancy: 0.1184
- The information below is about HL_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
6ZMI|1|L5|U|4210
6ZMI|1|L5|C|4211
6ZMI|1|L5|A|4212
6ZMI|1|L5|A|4213
6ZMI|1|L5|A|4214
6ZMI|1|L5|C|4215
6ZMI|1|L5|G|4216
6ZMI|1|L5|G|4217
6ZMI|1|L5|U|4218
6ZMI|1|L5|A|4219
6ZMI|1|L5|A|4220
6ZMI|1|L5|C|4221
6ZMI|1|L5|G|4222
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LI
- 60S ribosomal protein L10-like
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
Coloring options: