HL_6ZMI_113
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUUAAUUC
- Length
- 8 nucleotides
- Bulged bases
- 6ZMI|1|S2|U|1371
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZMI_113 not in the Motif Atlas
- Homologous match to HL_4V88_215
- Geometric discrepancy: 0.1013
- The information below is about HL_4V88_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
6ZMI|1|S2|G|1366
6ZMI|1|S2|U|1367
6ZMI|1|S2|U|1368
6ZMI|1|S2|A|1369
6ZMI|1|S2|A|1370
6ZMI|1|S2|U|1371
6ZMI|1|S2|U|1372
6ZMI|1|S2|C|1373
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SR
- 40S ribosomal protein S17
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