HL_6ZMO_060

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMO_060 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.5008

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZMO|1|L5|G|3757
6ZMO|1|L5|U|3758
6ZMO|1|L5|A|3759
6ZMO|1|L5|A|3760
6ZMO|1|L5|C|3761
6ZMO|1|L5|U|3762
6ZMO|1|L5|A|3763
6ZMO|1|L5|U|3764
6ZMO|1|L5|G|3765
6ZMO|1|L5|A|3766
6ZMO|1|L5|C|3767

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain CB

Transfer RNA; tRNA

Chain CE

Cell growth-regulating nucleolar protein

Chain S2

Small subunit ribosomal RNA; SSU rRNA