HL_6ZMO_094
3D structure
- PDB id
- 6ZMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUGACUC
- Length
- 8 nucleotides
- Bulged bases
- 6ZMO|1|S2|U|294
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZMO_094 not in the Motif Atlas
- Geometric match to HL_4V88_191
- Geometric discrepancy: 0.2118
- The information below is about HL_4V88_191
- Detailed Annotation
- T-loop with 1 bulged base
- Broad Annotation
- T-loop
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
6ZMO|1|S2|G|288
6ZMO|1|S2|G|289
6ZMO|1|S2|U|290
6ZMO|1|S2|G|291
6ZMO|1|S2|A|292
6ZMO|1|S2|C|293
6ZMO|1|S2|U|294
6ZMO|1|S2|C|295
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SL
- 40S ribosomal protein S11
Coloring options: