HL_6ZMT_024

3D structure

PDB id

6ZMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6ZMT|1|2|U|1300, 6ZMT|1|2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMT_024 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.414

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6ZMT|1|2|A|1295
6ZMT|1|2|U|1296
6ZMT|1|2|U|1297
6ZMT|1|2|G|1298
6ZMT|1|2|A|1299
6ZMT|1|2|U|1300
6ZMT|1|2|A|1301
6ZMT|1|2|G|1302
6ZMT|1|2|C|1303
6ZMT|1|2|U|1304

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S15

Chain f

40S ribosomal protein S29

Chain g

Ubiquitin-40S ribosomal protein S27a