HL_6ZMW_026

3D structure

PDB id

6ZMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

6ZMW|1|A|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMW_026 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.2157

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZMW|1|A|G|1245
6ZMW|1|A|A|1246
6ZMW|1|A|C|1247
6ZMW|1|A|U|1248
6ZMW|1|A|C|1249
6ZMW|1|A|A|1250
6ZMW|1|A|A|1251
6ZMW|1|A|C|1252
6ZMW|1|A|A|1253
6ZMW|1|A|C|1254

Current chains

Chain A

18S rRNA

Nearby chains

Chain Y

40S ribosomal protein S16

Chain h

40S ribosomal protein S20

Chain w

Transfer RNA; tRNA